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Prime Partners, Chartered Accountants
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R&D for pharma & biotech

The ATO pays cash for research, whether or not you have revenue.

A company turning over less than $20 million receives a 43.5 per cent refundable offset on eligible R&D spend. Refundable means it arrives as money, not as a credit against tax you are not yet paying.

For most Australian biotechs this is the largest source of funding that costs no equity, and often the difference between a program continuing and a company running out of runway. Prime Innovation, a specialist division of Prime Partners, works with pharmaceutical, biotech and medtech companies on identifying eligible activity, applying the Clinical Trials Determination properly, managing overseas findings and keeping documentation that survives review. Fixed fee, never a percentage of the refund.

In short

Covered trials are core R&D by law.

Drug and device development is long, expensive and almost entirely pre-revenue, which is exactly the situation a refundable offset is built for. On top of that, clinical trials in phases 0, I, II and III for a therapeutic good that is not yet approved are taken to be core R&D activities under the Clinical Trials Determination 2022, so the usual eligibility argument does not have to be had for them. What is left is getting the expenditure, the apportionment and the documentation right.

Clinical trials

The determination is a short cut, not a separate program.

The single biggest development for biotech claims was the Industry Research and Development (clinical trials, phase 0, I, II, III, pre-market pilot stage, pre-market pivotal stage, for an unapproved therapeutic good) Determination 2022, usually just called the Clinical Trials Determination. It commenced on 1 April 2022 and is still in force.

An activity that falls inside it is taken to be a core R&D activity. In practice that means showing the trial is covered, rather than separately proving technical uncertainty, a systematic progression of work and a purpose of generating new knowledge for that activity. It gives certainty and a shorter registration path. It does not give you a different program with different rules.

Covered

Phase 0, exploratory first in human microdosing studies.
Phase I, first administration to humans, safety, tolerability and pharmacokinetics.
Phase II, trials in patients with the target condition, safety and efficacy signals.
Phase III, larger confirmatory trials of clinical benefit and side effects.
Pre-market pilot and pre-market pivotal stage trials.

All of them have to relate to an unapproved therapeutic good, meaning a medicine, device, diagnostic or other therapeutic good not yet on the Australian Register of Therapeutic Goods.

Not covered

Phase IV and other post-market trials.
Trials of generic products and biosimilar medicines.
Marketing, market testing and promotional activity.
Routine bioequivalence testing where there is no technical uncertainty.

A trial outside the determination is not automatically ineligible. It has to be self-assessed against the standard core and supporting tests instead, which is where the work is.

What else qualifies

Most of a pre-clinical program, where the outcome is genuinely unknown.

The incentive sits in Division 355 of the Income Tax Assessment Act 1997. Beyond covered trials, a wide range of laboratory and pre-clinical work is core R&D where it involves real technical uncertainty, a systematic progression, and the purpose of generating new knowledge.

Drug discovery and formulation

New molecular entities, novel formulations or delivery mechanisms where efficacy, stability or bioavailability is genuinely uncertain.

Pre-clinical studies

In-vitro assays and animal model studies testing a hypothesis about safety or mechanism of action, where the outcome cannot be known in advance.

Biomarkers and diagnostics

Discovering and validating biomarkers, companion diagnostics or assays where sensitivity and specificity are unproven.

Medical devices

Devices and combination products where technical performance against the intended clinical use is uncertain.

Process and bioprocess work

Novel synthesis routes, cell line development or fermentation processes where yield, purity or scalability cannot be predicted from what is already known.

Investigational batches

Manufacturing trial material for a covered clinical trial, as a supporting activity tied to the core trial.

Data and biostatistics

Data management, biostatistics and trial documentation that directly support a core activity.

Where the line falls

Routine testing, commercial scale manufacture and regulatory paperwork are not core R&D on their own, whatever the program around them is doing.

The benefit

Refundable is the word that matters.

Most biotechs are pre-revenue and in a tax loss position, so an offset held as a credit against future tax is worth very little now. A refundable offset is paid as cash.

Aggregated turnoverOffsetWhat it means
Under $20 million43.5%, refundableCash from the ATO even while making losses, which is the usual pre-revenue outcome.
$20 million or moreCorporate tax rate plus an intensity premium, non-refundableA credit against tax payable. The premium scales with how R&D intensive the company is.

Watch the turnover test before you rely on the refund. Aggregated turnover picks up every connected entity and affiliate worldwide, so an Australian biotech owned by a larger overseas parent can be pushed past $20 million on group turnover alone, which turns a cash refund into a credit the company cannot use. We model that before anyone budgets around it.

A worked example

A clinical stage company with no product revenue.

A biotech developing a novel small molecule therapeutic. No product revenue, aggregated turnover under $20 million including a little grant and interest income. It is running a Phase I trial of an unapproved therapeutic good in Australia, alongside pre-clinical work.

CategoryTotal costEligibleWhy
Phase I trial, CRO, sites and monitoring$1,800,000$1,800,000A covered core activity under the determination
Investigational drug manufacture, trial batches$600,000$600,000Supporting activity, material for the covered trial
Pre-clinical and assay development, in-house scientists$700,000$560,00080 per cent apportioned to core R&D on timesheets
Biostatistics and data management$180,000$180,000Supporting activity tied to the trial
Lab consumables and reagents$220,000$160,000The R&D portion only
Total$3,500,000$3,300,000 

$3,300,000 of eligible expenditure at 43.5 per cent is a refundable offset of $1,435,500. Turnover is under $20 million and the company is in losses, so that arrives as cash. Roughly eighteen months of extra runway, funded by the ATO rather than by selling more equity.

Illustrative only. What a claim is actually worth depends on your facts, your apportionment, and any feedstock or recoupment adjustments.

Offshore trials

The overseas finding, and the deadline that has no exceptions.

Biotech programs often run sites overseas, to reach a patient population or a specialist facility. Overseas expenditure is only claimable where AusIndustry has issued a positive overseas finding before you claim, and the activity has to meet all four of these.

1
A significant scientific link
To a core R&D activity conducted solely in Australia, and essential to completing that Australian activity.
2
It cannot be done here
Because the facilities, expertise or equipment are not available in Australia, or it would breach a quarantine law, or it needs a population of living things not available here, or geographical or geological features not available here.
3
Cost is not a reason
Cheaper overseas does not qualify, however much cheaper.
4
Smaller than the Australian work
The total cost of the overseas activities has to be less than the related Australian activities.

The deadline is the part that catches people. The application has to be lodged before the end of the income year in which the overseas activity is conducted. AusIndustry cannot accept a late application or grant an extension under any circumstances. Miss it and the overseas spend is permanently ineligible, which is one of the most expensive mistakes in this area and one of the easiest to avoid by planning early.

What goes wrong

Six things that cost biotechs money.

Treating scale-up as research

Once a formulation or process is proven, manufacturing it at commercial scale is routine production. The product being innovative does not make the manufacturing experimental.

Missing the overseas finding

Offshore trial spend is lost unless the finding is lodged before the end of the income year the activity happens in. There are no extensions.

Overlooking group turnover

Worldwide connected entity and affiliate turnover can push an Australian company past $20 million and turn the cash refund into a credit it cannot use.

Ignoring feedstock

Where R&D turns inputs into product that is later sold or used, a feedstock adjustment claws part of the benefit back. It catches companies that sell or use trial material.

Claiming Phase IV or generics

Post-market trials, and trials of generics and biosimilars, sit outside the determination and are generally not core R&D.

Claiming the regulatory work

Preparing the dossier, routine TGA submissions and quality assurance are not experimental in themselves. They count only as supporting activity tied to a registered core activity.

What changes in 2028

Announced, not legislated, and not yet affecting a claim.

The 2026-27 Federal Budget announced reforms to the R&D Tax Incentive as the first stage of the government's response to the Ambitious Australia strategic examination of R&D. They are proposed to apply to income years starting on or after 1 July 2028, so they do not touch a current year claim.

MeasureProposed change
Refundable offset turnover thresholdUp from $20 million to $50 million
Supporting R&D activitiesRemoved from eligibility
Core offset ratesUp by 4.5 percentage points
Minimum spendUp from $20,000 to $50,000, with smaller claims still possible through a Research Service Provider or a CRC
Expenditure capUp from $150 million to $200 million
RefundabilityLimited to companies in their first ten years

The ten year limit on refundability is the contentious one for biotech, where a program routinely runs longer than a decade before there is any revenue at all. We are watching the draft legislation and will talk to affected clients well before anything commences.

Why us

Clinical science, the regulatory path and tax law, in one claim.

A pharma or biotech claim sits where all three meet, and a claim that satisfies one of them while ignoring the others does not survive review. Our R&D work is led by Hamish Sinclair, our R&D Manager, who works across software and pharmaceutical clients. We align the AusIndustry technical requirements with the ATO's expenditure rules and document the claim so it holds up if it is looked at.

We charge a fixed fee, never a percentage of your refund. As chartered accountants we are accountable for the position we sign, and we would rather build a claim that stands up than one that looks larger.

Related

The rest of the innovation picture.

Common questions

Questions, answered.

Are clinical trials eligible?
Yes. Phase 0, I, II and III trials, along with pre-market pilot and pre-market pivotal stage trials, for an unapproved therapeutic good are taken to be core R&D activities under the Clinical Trials Determination 2022. Where a trial is covered you only have to show that it is covered, rather than arguing the full core R&D test for it. Phase IV trials and trials of generics and biosimilars are not covered.
How much is it worth to a pre-revenue biotech?
A company with aggregated turnover under $20 million receives a 43.5 per cent refundable offset on eligible R&D expenditure. Because it is refundable, a loss making company receives it as cash from the ATO. On $3.3 million of eligible spend that is roughly $1.43 million. At $20 million of turnover or more the offset is non-refundable, at the corporate tax rate plus an intensity premium.
What is the Clinical Trials Determination 2022?
A legislative determination made under the Industry Research and Development Act 1986 that lists certain clinical trial stages, phase 0, I, II, III, pre-market pilot and pre-market pivotal, for an unapproved therapeutic good, as core R&D activities. It commenced on 1 April 2022 and remains in force. It gives biotech and medtech companies more certainty and a shorter registration path, because the technical uncertainty test does not have to be argued for a covered trial.
Can we claim trials conducted overseas?
Only where AusIndustry has issued a positive overseas finding before you claim. The overseas activity has to have a significant scientific link to a core activity conducted solely in Australia, has to be unable to be conducted here for a permitted reason, being facilities, expertise or equipment, a quarantine law, a population of living things not available here, or geographical or geological features not available here, and the overseas activities have to cost less than the related Australian ones. The application has to be lodged before the end of the income year in which the overseas activity is conducted, and there are no late applications and no extensions.
Is manufacturing scale-up eligible?
Generally no. Once a product, formulation or process is proven, manufacturing it at commercial scale is routine production rather than experimentation. Making investigational or trial batches for a covered trial can qualify as a supporting activity. Where R&D produces material that is later sold or used, a feedstock adjustment may also reduce the benefit.
Is regulatory and TGA work eligible?
Preparing a regulatory dossier, making routine TGA submissions and doing quality assurance are not experimental in their own right, so they are not core R&D. They can qualify as supporting activities where they have a direct, close and relatively immediate connection to a registered core activity. The distinction comes up often in AusIndustry review.
When do we register?
Within ten months of the end of your company's income year, so by 30 April 2026 for a 30 June 2025 year end. Registration is annual and has to be done before the offset is claimed in the company tax return. Miss the deadline and the claim for that year is gone.
What records does AusIndustry expect?
Contemporaneous documentation showing that technical uncertainty existed, that a systematic progression of work was followed, and that new knowledge came out of it. For a biotech that means trial protocols and ethics approvals, lab notebooks, batch and manufacturing records, statistical analysis plans, study reports and dated experimental data. Records created during the work, not assembled afterwards at claim time.
Are the 2028 changes in effect yet?
No. The measures announced in the 2026-27 Federal Budget, including the refundable threshold rising to $50 million, supporting activities losing eligibility, the minimum spend rising to $50,000, the cap rising to $200 million and refundability being limited to a company's first ten years, are announced rather than legislated, and are proposed to start for income years beginning on or after 1 July 2028. They do not affect current year claims.

Talk to us before the year end, not after it.

The two things that most often cost a biotech money, an overseas finding and the group turnover test, both have to be dealt with before the income year closes. After that there is nothing anyone can do.

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